Sex is not binary

Arnar Pálsson, 01/04/2025

Wrote couple of pieces for the icelandic web of science, a Q and A web about scientific topics, about sex related traits and their diversity in nature.

They are in Icelandic, but the central idea is that sex is quite variable in nature. Even in humans a range of traits are found in sex related structures, behaviors and perceptions.

All of it is quite natural. See for instance. Arnar Pálsson. „Hvað hefur áhrif á kyneinkenni og kynhneigð?“ Vísindavefurinn, 5. febrúar 2025, sótt 1. apríl 2025, https://visindavefur.is/svar.php?id=87491.

 

Silja Bára for rector

Arnar Pálsson, 10/03/2025

Wrote a letter of support for the candidacy of Silja Bara Omarsdottir for rector of the University of Iceland.

On icelandic news website Visir.is Mann­legi rektorinn Silja Bára - Vísir

Antteam visiting high schools

Arnar Pálsson, 10/02/2025

These weeks the Antteam at the University of Iceland is visiting high schools in Reykjavík and neighboring towns.

We have already been to FB, FG, MH, Kvennaskólinn and Verslunarskólinn, with FÁ scheduled this Wednesday.

Our graduate student Andreas Guðmundsson and Marco Mancini, along with Rafn Sigurðsson, doing an MSc on invasive mosses, are the main team members.

See more on our ants in iceland web page, maurar.hi.is.

Submission: Whole genome sequencing reveals how plasticity and genetic differentiation underlie sympatric morphs of Arctic charr

Arnar Pálsson, 28/01/2025

Whole genome sequencing reveals how plasticity and genetic differentiation underlie sympatric morphs of Arctic charr

Khrystyna Kurta , Mariano Olivera Fedi , and many others. Submitted to Nature Ecology and Evolution, and then Nature Communications.

Salmonids have a remarkable ability to form sympatric morphs after postglacial colonization of freshwater lakes. These morphs often exhibit differences in morphology, feeding, and spawning behaviour. Here we explore the genetics of morph differentiation by establishing a high-quality, annotated reference genome for the Arctic charr and use this as a resource for population genomic analysis of morphs from two Norwegian and two Icelandic lakes. The four lakes represent the spectrum of genetic differentiation between morphs from one lake with no genetic differentiation between morphs, implying phenotypic plasticity only, to two lakes with locus-specific genetic differentiation, implying incomplete reproductive isolation, and one lake with strong genome-wide divergence consistent with complete reproductive isolation. As many as 12 putative inversions ranging from 0.45 to 3.25 Mbp in size segregated among the four morphs present in one lake, Thingvallavatn, and these contributed significantly to the genetic differentiation among morphs. None of the putative inversions was found in any of the other lakes, but there were cases of partial haplotype sharing in similar morph contrasts in other lakes. The results are consistent with a highly polygenic basis of morph differentiation with limited genetic parallelism between lakes. The results support a model where morph differentiation is usually first established due to phenotypic plasticity that results in niche expansion and separation, followed by gradual development of reproductive isolation and locus-specific differentiation and eventually complete reproductive isolation and genome-wide divergence. A major explanation for salmonids’ ability to diversify into multiple sympatric morphs is likely the genome complexity caused by their ancient whole genome duplication that enhances evolvability.

Preprint: Gene flow and habitat heterogeneity shape coexistence dynamics of Arctic charr morphs in connected lakes

Arnar Pálsson, 20/01/2025

Han Xiao, Arnar Palsson, Zophonías Oddur Jónsson, et al. Gene flow and habitat heterogeneity shape coexistence dynamics of Arctic charr morphs in connected lakes. Authorea. December 27, 2024. DOI: 10.22541/au.173531304.47377188/v1

Submitted to Molecular Ecology.

Abstract

Sympatric morphs provide valuable systems for studying incipient divergence despite incomplete reproductive isolation. In connected waterbodies with spatially heterogeneous habitats, one or more morphs may form metapopulation structures, generating eco-evolutionary dynamics unlike those in single lakes. We studied the phenotypic and genome-wide differentiation in Arctic charr (Salvelinus alpinus) in two Icelandic lakes: Thingvallavatn, known to harbour four distinct morphs, and a smaller downstream lake, Ulfljotsvatn. Our analyses confirm a single origin of charr polymorphism in this system, with all morphs present in both lakes. Relative morph abundances differ between the lakes: PL-charr dominate in Thingvallavatn, whereas LB-charr are most abundant in Ulfljotsvatn. Three morphs, large- (LB-), small (SB-) benthivorous and planktivorous (PL-) charr, are genetically distinct. The system likely forms a source-sink structure for both PL- and SB-charr, though migration rates from Thingvallavatn vary remarkably, resulting in distinct population dynamics. Conversely, LB-char exhibit genetic differentiation between the lakes, suggesting the presence of a separate population in Ulfljotsvatn. While piscivorous (PI-) charr appear genetically similar to PL-charr, evidence suggests hybridization between PI- and LB-charr in both lakes. Moreover, the higher hybridization in the downstream lake likely contributes to the observed erosion of genetic separation between LB- and PL-charr in Ulfljotsvatn. These findings suggest that the complex interplay of habitat heterogeneity and morph-specific migrations shapes the coexistence and eco-evolutionary dynamics of sympatric charr morphs in the connected lakes. Our study highlights the importance of investigating early divergence in spatially complex systems to advance eco-evolutionary research.

Comparison of distributions of Heterozygosity by morphs and lakes

Preprint: Variation of tooth traits in ecologically specialized and sympatric morphs

Arnar Pálsson, 19/12/2024

Variation of tooth traits in ecologically specialized and sympatric morphs

Guðbjörg Ósk Jónsdóttir*, Finnur Ingimarsson, Sigurður Sveinn Snorrason, Sarah Elizabeth Steele, Arnar Pálsson. Submitted to Evolutionary Biology, link to bioRxiv.

GOJ: https://orcid.org/0009-0008-0502-5553
FI: https://orcid.org/0000-0002-0815-7622
SES: https://orcid.org/0000-0001-8404-5537
AP: https://orcid.org/0000-0002-6525-8112

Rotational from top left, premaxilla, maxilla, supramaxilla  (w.o. teeth) and palatine.

Abstract
Differences in dentition between species relate to feeding specialisations, as examples of tetrapod dentition variation show clearly. The association of tooth traits and specialisations in non-mammalian vertebrates is less studied. We examined variation in dental traits in four sympatric morphs of Arctic charr (Salvelinus alpinus) which differ in feeding specialisations, head and jaw bone morphology. We studied tooth numbers in six bones (dentary, maxilla, premaxilla, palatine, vomer and glossohyal) and tooth angles in one bone (maxilla). We found fluctuating asymmetry in tooth numbers and angles and that the allometry of tooth numbers varied by bone but not morphs. The tooth numbers differed by morphs in four bones (dentary, palatine, vomer and glossohyal). In general, the morphs defined as pelagic had more teeth, and this relates partially to changes in bone shape. There was a difference in maxilla tooth angle, with benthic morphs having teeth which were angled more inwards. Dentary and maxilla tooth number correlated moderately with bone shape, maxilla tooth angle and premaxilla tooth number did not. While it is currently unknown what tooth characteristics are ancestral vs derived in these populations, the marked differences in specific bones presents an opportunity to explore rapid adaptive evolution in dentition.

Uppeldissvæði laxfiska í Þingvallavatni og tengdum ám

Arnar Pálsson, 09/12/2024

 

Large benthic charr on the spawning grounds, picture took Kalina H. Kapralova and Quentin Horta.

Now published in the Icelandic Naturalist. Areas used by Salmonid juveniles in Lake Þingvallavatn and connected rivers. Uppeldissvæði laxfiska í Þingvallavatni og tengdum ám (in icelandic, w. English abstract). Guðbjörg Ósk Jónsdóttir, Benóný Jónsson, Magnús Jóhannsson og Arnar Pálsson.  (Náttúrufræðingurinn).

Nursery grounds of juvenile fish provide them shelter and food making them essential for the life of an individual, the population and species as a whole. In Lake Þingvallavatn, Iceland, two species of salmonids inhabit the lake, Brown trout (Salmo trutta) and Arctic charr (Salvelinus alpinus). Extensive biological studies have been conducted on adult fish of both species in the lake and its catchment area, but much less is known about the biology of age-0 fish and the ecology of their first 1−2 years in the life. Given the critical importance of nursery areas for the existence of fish populations and their contribution to biological diversity, research was undertaken to examine the distribution of charr and trout juveniles in the surf zone of Lake Þingvallavatn and in streams connected to the lake. The research questions were,

1) Where in the lake and connected streams are juvenile fish found?

2) Has the density of charr and trout juveniles changed in the last twenty years?

3) Is there a connection between the environmental conditions and the presence of juvenile fish?

Data from Veiðimálastofnun (now Hafrannsóknastofun) surveys of salmonid juveniles in Þingvallavatn and adjacent rivers, spanning 2000 to 2021, were analyzed. In the summer of 2022, ten locations in Þingvallavatn were surveyed, fish were caught and measured, and several environmental factors were assessed using electrofishing. Fish were counted, identified by species, and measured for length and weight. Additionally, environmental factors, including the lake bottom composition and shoreline vegetation, were documented. The results show that the two species utilize different juvenile habitats, trout predominantly occupy river habitats, whereas charr are more abundant in the surf zone of the lake. There was a significant increase in density of the Brown trout over the 19-year period, but density of Arctic charr remained relatively stable with a sign of subtle decline. In 2022, six possible nursery sites were documented in the surf zone, four with majority of Arctic charr and two with mainly Brown trout. There was little overlap in the species distribution. Vegetation on the shoreline was the only environmental factor significantly correlated with the presence or absence of juvenile fish on a given site. Further studies on juvenile fish biology in the lake and adjacent streams and river might explore the interplay of environmental factors and genetics in shaping the size and morphology of adult fish in both species´ populations. This is particularly relevant for Arctic charr, which features four distinct sub-populations (or morphs) differing in size, shape, trophic morphology and ecology.

 

Mývatn conference

Arnar Pálsson, 23/09/2024

Lake Mývatn in north Iceland is unique for its biota and geology. To commemorate 50 years of research on the lake, and the retirement of Árni Einarsson a meeting was held there last week. Multiple scientists came to describe the hydrology, ecology and evolution of the organisms and ecosystem in the lake.

The programme was quite extensive and interesting - Mývatn research conference 2024.

Hot shore spring on the Myvatn east side

Guðbjörg and Kenedy brought some of our fish stuff to the meeting.

Guðbjörg Ósk Jónsdóttir - Divergence of functional phenotypes in feeding elements of Arctic charr along the benthic – pelagic axis

Kenedy A. Williams - Patterns of Feeding Element Specialization in Arctic charr and Brown trout

Arnar Pálsson - Genetic structure and relatedness of anadromous and landlocked populations of Icelandic brown trout

 

Skilningur á rás 1

Arnar Pálsson, 14/08/2024

Fyrir örþættina Uppástand á rás 1.

Umsjón og upptaka Jóhannes Ólafsson. Flutt 24. júní 2024.

Skilningur

Skilningur var ræddur við kvöldverðarborðið. Börnin reyndu að misskilja skilninginn, skilja misskilninginn, sundurliða skil – ninginn, inga við skilin og aðskilja skilninginn og skilningsleysið, og skemmta sér í leiðinni. Leikur að orðum, kasta þeim á milli sín, hvolfa þeim og hnoða, snúa út úr þeim og innúr, er ein dægradvöl fjölskyldunar, sem ég tel hjálpa okkur að skilja og öðlast skilning.

Samtal, þar sem skipst er á orðum, spurningar settar fram, efi læðist um og steinum velt um koll. Grín gert að orðum, og síðan grín gert að gríninu. Með öðrum orðum, við færum rök og mótrök, greinum forsendur og rætur orða. Ja hérna, spjall yfir kvöldverði var etv eins og heimspeki eða vísindi.

Forvitni, spurningar og samtal eru mikilvæg mannlegri tilveru og gefa okkur lífsfyllingu. Sálfræðingurinn Mihaly Csikszentmihalyi – höfundur bókanna Flow og Creativity sagði eitt sinni að

"Búið til fullt af hugyndum. Reynið einnig að koma með ólíklegar hugmyndir"

Í vinnunni minni við HÍ, kenni ég margvísleg viðfangsefni og rannsaka allskonar spennandi hluti. Á haustin kenni ég venjulega mannerfðafræði, nema ekki í haust af því að ráðherra og fjárveitingavaldið skáru niður framlög til háskólanna. Það má spyrja sig hversu mikinn skilning alþingi hafi á mikilvægi skilningsleitarinnar í Háskólum landsins.

Sem dæmi, í mannerfðafræði fjöllum við um áhrif erfða og umhverfis á margvíslega eiginleika mannfólks. Mikilvægasti hluti námskeiðsins eru kynningar nemenda á viðfangsefnum sem þeir velja sér, allt frá erfðum klumbrufóts, sögu þjóða eyjaálfu og breytileika í byggingu erfðamengja manna. Viðfangsefnin sjálf eru mikilvæg, en mestu skiptir er að nemendur þjálfist í vísindalegu samtali. Tökum þessa tvö viðfangsefni fyrir.

Nemendur spyrja hvaða þættir hafa áhrif á tiltekið einkenni? Hvort vegur meira erfðir eða umhverfi, og hversu sterk eru áhrif tilviljunarinnar? Oft er hugsað um erfðafræði sem leitina að genum sem móta einhverjar eiginleika, hversu margir erfðaþættir og hvernig eru áhrif þeirra? En fyrir mörg einkenni eru áhrif umhverfisþátta sterkari og tilviljun mjög mikilvæg. Þau áhrif er aftur á móti erfitt að greina og skilgreina, sérstaklega miðað við erfðabreytileika. Breytileika í genum er auðvelt að mæla, með því að keyra lífsýni (DNA úr blóði) í gegnum stórkostleg apparöt, og greina þær milljónir staða í erfðamenginu sem eru breytilegir. Ekkert sambærilegt tæki dugar til að mæla allt umhverfi sem við hrærumst í. Hversu mörg epli höfum við borðað yfir ævina, hversu margar sýkingar fengum við, hvaða sýkingar og hvenær. Sultum við í bernsku eða urðum fyrir öðru áfalli? Nemendurnir fjalla um slíkar spurningar í kringum viðfangsefni sín.

En þau spyrja líka um eðli þekkingarinnar og þess sem ekki er vitað.

Þau lesa greinar og ræða við sérfræðinga, og reyna að ná utan um viðfangsefnin. (tekst mjög vel í flestum tilfellum).  Þau spyrja; Hvað er vitað um sjúkdóm X? Hversu traustar eru þær upplýsingar? Hvernig var þeirra þekkingar aflað? Er önnur túlkun á gögnunum möguleg? Hvaða eiginleika hefur aðferðin sem var notuð ? Kosti galla, bjaga. Þetta er áþekkt kvöldverðar samtalinu sem við ræddum áðan,  spurt er um forsendur og röksemdir, rökflæði, rök og mótrök sett fram, gæði þeirra og gallar metnir.

Sjálfsöryggi og sannfæringarkraftur er ekki mikilvægasti kostur vísindafólks. Það er nóg af sannfærandi fólki með vísindamenntun, sem hefur aukið á misskilning mannfólks frekar en skilning. Má til með að vísa í umfjöllun Veru Illugadóttir um lækninn Andrew Wakefield sem leiddi til víðtæks misskilnings um eðli og áhættur af bólusetningum. Mikilvægt er að viðhafa varfærni og hófsemi í ályktunum. Það er mjög gefandi að sjá nemendur byggja upp hæfileika sína á þessum sviðum. Maður vonar auðvitað að þeirra persónulega leit að þekkingu og skilningi haldi áfram eftir útskrift,  hvort sem þau fari formlega menntabraut eða leit á aðrar slóðir.

Mihaly Siksentmihaly – lagði einmitt áherslu á að allir geta öðlast lífsfyllingu með því að spyrja spurninga og kafa í málin, leita að skilningi.

Ég ljúka þessum pistli á annari tilvitnun í hann:

„Ef þú hefur áhuga á einhverju, þá veitiru því athygli

Og ef þú veitir einhverju athygli, þá er líklegt að þér muni finnast það áhugavert.

Margt af því sem okkur finnst áhugavert er það ekkert endilega í sjálfu sér, heldur vegna þess að við lögðum það á okkur að veita því athygli.“

Athygli er gjaldmiðill mannslegs samfélags, sérstaklega í nútíma. Vonandi var þessi pistill nógu áhugaverður fyrir hlustendur, eða a.m.k. vakti áhuga ykkar á því að hafa áhuga á einhverju. Og leiða þannig til skilnings.

Skírnir

Arnar Pálsson, 14/08/2024

In January 2023 I was asked to give a historical account of the discovery of DNA helix in a local medical conference. From that I wrote a little piece about the discovery and discussed how DNA is seriously overinterpreted in modern society, as synonymous with Fate and a determinant stronger than environmental factors.

Sorry, no translation available.